  Qlucore Licenses   Qlucore Omics Explorer   Analysis   2D PCA plot
 2way or twoway Anova
 Absent/present calls
 Anova in Qlucore
 BAM file sort order
 Biomarker Workbench
 Calculation of Fold change and Difference
 ChIPseq and ATACseq
 Computation of R/R2 statistics
 Create a subset of variables based on PCA and use it to model.
 dCT values
 Distances
 Eliminate the time factor in data recorded at several time points
 Experiment designs (ANOVA, ttest, limma,...)
 Few or limited number of samples
 Find favorite genes, proteins or variables using the search function
 Fold change and difference
 Hierarchial clustering algorithm
 Hierarchical clustering memory usage
 How do I know how much I should filter by variance or by ANOVA
 How does Qlucore calculate the length of the gene to do the normalization?
 How is the normalization (mean=0, Var=1) done in Omics Explorer?
 Identifying subgroups, patterns and structure
 Linkage criterion
 Log functionality and logging analysis steps
 Low expression levels RNAseq data filtering
 Methylation data support
 Missing values and reconstruction
 Most important PCA variables
 Network and graphs
 Normalization of RNAseq data in Qlucore Omics Explorer
 Normalization using housekeeping genes
 Normalization Zscore (mean=0, var=1) calculations
 Normalize RNAseq data in R
 Normalizing PCR data
 Open interface to R (API)
 Paired data
 Pathway analysis and gene sets
 Quantile normalization and eliminated factors
 RNAseq normalization for BAM files
 Selecting Affymetrix probesets using Jetset or collapse
 Statistical tests for the Extended option using the Open R API: Welch, Wilcoxon, Limma, MannWhitney
 Statistsics
 Supported classifier methods
 The signaltonoise (SNR) metric
 Tips for single cell data analysis
 Topological data analysis
 TPM values for RNASeq
 Twocolor loop designs
 Unsupervised clustering
 Variable list and matches
 Variables differentiating and/or discriminating subgroups. Finding discrminating variables.
 Weighted correlation network analysis (WGCNA)
 What data is used in the Two group comparison (ttest)
 What is projection score and how do I use it.
 Working with multiple data sets
 Working with RNAseq data (bam)
 Data Import   NGS Module   Other  

